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Jobsub ID 109251.0@justin-prod-sched02.dune.hep.ac.uk

Jobsub ID109251.0@justin-prod-sched02.dune.hep.ac.uk
Workflow TestingYes
Workflow ID500
Stage ID1
User nameamcnab@fnal.gov
HTCondor Groupgroup_dune
RequestedProcessors1
GPUNo
RSS bytes1073741824 (1024 MiB)
Wall seconds limit3600 (1 hours)
Submitted time2024-11-23 11:21:58
SiteUS_UConn-HPC
EntryGLUEX_US_UConn-HPC_osgce
Last heartbeat2024-11-23 11:24:10
From worker nodeHostnamecn445
cpuinfoAMD EPYC 7452 32-Core Processor
OS releaseScientific Linux release 7.9 (Nitrogen)
Processors1
RSS bytes1073741824 (1024 MiB)
Wall seconds limit172800 (48 hours)
GPU
Inner Apptainer?True
Job stateoutputting_failed
Allocator namejustin-allocator-int.dune.hep.ac.uk
Started2024-11-23 11:23:10
Input files
JobscriptExit code0
Real time0m (47s)
CPU time0m (14s = 29%)
Outputting started2024-11-23 11:23:58
Output files
Finished2024-11-23 11:24:10
List job events     Wrapper job log

Jobscript log (last 10,000 characters)

ne.opensciencegrid.org/products/dune/rucio/v35_4_0/NULL/lib/python3.9/site-packages/urllib3/util/retry.py", line 592, in increment
    raise MaxRetryError(_pool, url, error or ResponseError(cause))
urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='metacat.fnal.gov', port=9443): Max retries exceeded with url: /dune_meta_prod/app/data/declare_files?dataset=dune:all (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x14b7760cd460>: Failed to establish a new connection: [Errno 111] Connection refused'))

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v3_42_2/NULL/bin/metacat", line 8, in <module>
    sys.exit(main())
  File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v3_42_2/NULL/lib/python3.9/site-packages/metacat/ui/metacat_ui.py", line 168, in main
    cli.run(sys.argv, argv0="metacat")
  File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v3_42_2/NULL/lib/python3.9/site-packages/metacat/ui/cli/cli.py", line 216, in run
    self._run(command, context, argv, usage_on_error)
  File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v3_42_2/NULL/lib/python3.9/site-packages/metacat/ui/cli/cli.py", line 211, in _run
    return interp._run(pre_command + word, context, rest, usage_on_error = usage_on_error)
  File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v3_42_2/NULL/lib/python3.9/site-packages/metacat/ui/cli/cli.py", line 211, in _run
    return interp._run(pre_command + word, context, rest, usage_on_error = usage_on_error)
  File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v3_42_2/NULL/lib/python3.9/site-packages/metacat/ui/cli/cli.py", line 112, in _run
    return self(command, context, opts, args)
  File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v3_42_2/NULL/lib/python3.9/site-packages/metacat/ui/metacat_file.py", line 195, in __call__
    response = list(client.declare_files(f"{dataset_namespace}:{dataset_name}", 
  File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v3_42_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 819, in declare_files
    out = self.post_json(url, lst)
  File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v3_42_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 215, in post_json
    response = self.send_request("post", uri_suffix, data=data, headers=headers, stream=True)
  File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v3_42_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 154, in send_request
    self.LastResponse = response = self.retry_request(method, url, headers=headers, **args)
  File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v3_42_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 133, in retry_request
    response = requests.post(url, timeout=self.Timeout, **args)
  File "/cvmfs/dune.opensciencegrid.org/products/dune/rucio/v35_4_0/NULL/lib/python3.9/site-packages/requests/api.py", line 115, in post
    return request("post", url, data=data, json=json, **kwargs)
  File "/cvmfs/dune.opensciencegrid.org/products/dune/rucio/v35_4_0/NULL/lib/python3.9/site-packages/requests/api.py", line 59, in request
    return session.request(method=method, url=url, **kwargs)
  File "/cvmfs/dune.opensciencegrid.org/products/dune/rucio/v35_4_0/NULL/lib/python3.9/site-packages/requests/sessions.py", line 589, in request
    resp = self.send(prep, **send_kwargs)
  File "/cvmfs/dune.opensciencegrid.org/products/dune/rucio/v35_4_0/NULL/lib/python3.9/site-packages/requests/sessions.py", line 703, in send
    r = adapter.send(request, **kwargs)
  File "/cvmfs/dune.opensciencegrid.org/products/dune/rucio/v35_4_0/NULL/lib/python3.9/site-packages/requests/adapters.py", line 700, in send
    raise ConnectionError(e, request=request)
requests.exceptions.ConnectionError: HTTPSConnectionPool(host='metacat.fnal.gov', port=9443): Max retries exceeded with url: /dune_meta_prod/app/data/declare_files?dataset=dune:all (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x14b7760cd460>: Failed to establish a new connection: [Errno 111] Connection refused'))
metacat file declare returns 1
GFAL_CONFIG_DIR:    GFAL_PLUGIN_DIR: 
justin-rucio-upload attempt 1
DEBUG:root:Num. of files that upload client is processing: 1
DEBUG:dogpile.cache.region:No value present for key: "host_to_choose_choice['https://dune-rucio.fnal.gov']"
DEBUG:dogpile.lock:NeedRegenerationException
DEBUG:dogpile.lock:no value, waiting for create lock
DEBUG:dogpile.lock:value creation lock <dogpile.cache.region.CacheRegion._LockWrapper object at 0x147ec116f5e0> acquired
DEBUG:dogpile.cache.region:No value present for key: "host_to_choose_choice['https://dune-rucio.fnal.gov']"
DEBUG:dogpile.lock:Calling creation function for not-yet-present value
DEBUG:dogpile.cache.region:Cache value generated in 0.000 seconds for key(s): "host_to_choose_choice['https://dune-rucio.fnal.gov']"
DEBUG:dogpile.lock:Released creation lock
DEBUG:urllib3.connectionpool:Starting new HTTPS connection (1): dune-rucio.fnal.gov:443
DEBUG:urllib3.connectionpool:https://dune-rucio.fnal.gov:443 "GET /rses/?expression=SURFSARA HTTP/1.1" 200 None
DEBUG:urllib3.connectionpool:Starting new HTTPS connection (1): dune-rucio.fnal.gov:443
DEBUG:urllib3.connectionpool:https://dune-rucio.fnal.gov:443 "GET /rses/SURFSARA HTTP/1.1" 200 1260
DEBUG:root:Input validation done.
INFO:root:Preparing upload for file awt-1732360994-ofd4ZGBejU
DEBUG:urllib3.connectionpool:https://dune-rucio.fnal.gov:443 "GET /rses/SURFSARA/attr/ HTTP/1.1" 200 308
DEBUG:root:wan domain is used for the upload
DEBUG:root:Registering file
DEBUG:urllib3.connectionpool:https://dune-rucio.fnal.gov:443 "GET /accounts/dunepro/scopes/ HTTP/1.1" 200 737
DEBUG:root:Trying to create dataset: testpro:awt-uploads-202447
DEBUG:urllib3.connectionpool:https://dune-rucio.fnal.gov:443 "POST /dids/testpro/awt-uploads-202447 HTTP/1.1" 500 321
--- Upload try 1/1
--- Rucio upload 1/1 fails: An unknown exception occurred.
Details: no error information passed (http status code: 500)
--- Exit with 99
'justin-rucio-upload --rse SURFSARA --protocol davs --scope testpro --dataset awt-uploads-202447 awt-1732360994-ofd4ZGBejU --timeout 1200' returns 99


subject   : /C=UK/O=eScience/OU=Manchester/L=HEP/CN=justin-jobs-production.dune.hep.ac.uk/CN=1661652726/CN=173236099083
issuer    : /C=UK/O=eScience/OU=Manchester/L=HEP/CN=justin-jobs-production.dune.hep.ac.uk/CN=1661652726
identity  : /C=UK/O=eScience/OU=Manchester/L=HEP/CN=justin-jobs-production.dune.hep.ac.uk/CN=1661652726
type      : RFC compliant proxy
strength  : 2048 bits
path      : /home/awt-proxy.pem
timeleft  : 167:59:13
key usage : Digital Signature, Key Encipherment, Key Agreement
=== VO dune extension information ===
VO        : dune
subject   : /C=UK/O=eScience/OU=Manchester/L=HEP/CN=justin-jobs-production.dune.hep.ac.uk
issuer    : /DC=org/DC=incommon/C=US/ST=Illinois/O=Fermi Research Alliance/CN=voms1.fnal.gov
attribute : /dune/Role=Production/Capability=NULL
attribute : /dune/Role=NULL/Capability=NULL
timeleft  : 159:49:06
uri       : voms1.fnal.gov:15042

===== Results =====

Download/upload commands:
xrdcp --force --nopbar --verbose $read_pfn downloaded.txt
echo '{"namespace":"testpro","name":"FILENAME","size":0}' >tmp.json
metacat file declare --json -f tmp.json "dune:all"
justin-rucio-upload --rse $rse_name --protocol $write_protocol --scope testpro --dataset awt-uploads-202447 --timeout 1200 FILENAME
Use the wrapper job link on the page for the job on the justIN Dashboard to find the full log file, with errors from these commands

Each line: $JUSTIN_SITE_NAME $rse_name $download_retval $upload_retval $read_pfn $write_protocol
==awt== US_UConn-HPC DUNE_CERN_EOS 0 99 root://eospublic.cern.ch:1094//eos/experiment/neutplatform/protodune/dune/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== US_UConn-HPC DUNE_ES_PIC 0 99 root://xrootd.pic.es:1094/pnfs/pic.es/data/dune/RSE/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== US_UConn-HPC DUNE_FR_CCIN2P3_DISK 0 99 root://ccxrootdegee.in2p3.fr:1094/pnfs/in2p3.fr/data/dune/disk/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== US_UConn-HPC DUNE_UK_GLASGOW 0 99 root://cephc02.gla.scotgrid.ac.uk:1094//cephfs/dune/RSE/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== US_UConn-HPC DUNE_UK_LANCASTER_CEPH 0 99 root://xgate.hec.lancs.ac.uk:1094//cephfs/grid/dune/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== US_UConn-HPC DUNE_UK_MANCHESTER_CEPH 0 99 root://meitner.tier2.hep.manchester.ac.uk:1094//cephfs/experiments/dune/RSE/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== US_UConn-HPC DUNE_US_BNL_SDCC 0 99 root://dcdndoor.sdcc.bnl.gov:1094//pnfs/sdcc.bnl.gov/data/dune/RSE/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== US_UConn-HPC DUNE_US_FNAL_DISK_STAGE 0 99 root://fndca1.fnal.gov:1094/pnfs/fnal.gov/usr/dune/persistent/staging/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== US_UConn-HPC NIKHEF 0 99 root://dune.dcache.nikhef.nl:1094/pnfs/nikhef.nl/data/dune/generic/rucio/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== US_UConn-HPC PRAGUE 0 99 root://golias100.farm.particle.cz:1094/dpm/farm.particle.cz/home/dune/RSE/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== US_UConn-HPC QMUL 51 99 root://xrootd01.escqmul.ac.uk:1094//dune/RSE/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== US_UConn-HPC RAL-PP 0 99 root://mover.pp.rl.ac.uk:1094/pnfs/pp.rl.ac.uk/data/dune/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== US_UConn-HPC RAL_ECHO 0 99 root://xrootd.echo.stfc.ac.uk:1094/dune:/protodune/RSE/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== US_UConn-HPC SURFSARA 0 99 root://penguin12.grid.surfsara.nl:21094/pnfs/grid.sara.nl/data/dune/disk/RSE/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
justIN time: 2024-11-24 04:39:35 UTC       justIN version: 01.02.rc5