Jobsub ID 205914.0@justin-prod-sched02.dune.hep.ac.uk
Jobsub ID | 205914.0@justin-prod-sched02.dune.hep.ac.uk |
Workflow Testing | Yes |
Workflow ID | 500 |
Stage ID | 1 |
User name | amcnab@fnal.gov |
HTCondor Group | group_dune |
Requested | Processors | 1 |
GPU | No |
RSS bytes | 1073741824 (1024 MiB) |
Wall seconds limit | 3600 (1 hours) |
Submitted time | 2025-05-18 06:09:45 |
Site | UK_Edinburgh |
Entry | DUNE_UK_SGridECDF_ce1_multicore |
Last heartbeat | 2025-05-18 09:52:36 |
From worker node | Hostname | node2b23.ecdf.ed.ac.uk |
cpuinfo | Intel(R) Xeon(R) Gold 6338 CPU @ 2.00GHz |
OS release | Scientific Linux release 7.9 (Nitrogen) |
Processors | 1 |
RSS bytes | 1073741824 (1024 MiB) |
Wall seconds limit | 171000 (47 hours) |
GPU | |
Inner Apptainer? | True |
Job state | finished |
Allocator name | justin-allocator-int.dune.hep.ac.uk |
Started | 2025-05-18 09:49:21 |
Input files | |
Jobscript | Exit code | 0 |
Real time | 2m (175s) |
CPU time | 0m (19s = 10%) |
Max RSS bytes | 64114688 (61 MiB) |
Outputting started | 2025-05-18 09:52:16 |
Output files | |
Finished | 2025-05-18 09:52:36 |
Saved logs | justin-logs:205914.0-justin-prod-sched02.dune.hep.ac.uk.logs.tgz |
List job events Wrapper job log |
Jobscript log (last 10,000 characters)
th: pnfs/grid.sara.nl/data/dune/disk/RSE/testpro/8a/f8/awt-1747561765-ovvj11ypXX?xrd.gsiusrpxy=/home/awt-proxy.pem&xrd.wantprot=gsi,unix, flags: none): [ERROR] Error response: no such file or directory.
[2025-05-18 10:52:11.062574 +0100][Debug ][ExDbgMsg ] [otter12.grid.surfsara.nl:21094] Calling MsgHandler: 0x128b650 (message: kXR_stat (path: pnfs/grid.sara.nl/data/dune/disk/RSE/testpro/8a/f8/awt-1747561765-ovvj11ypXX?xrd.gsiusrpxy=/home/awt-proxy.pem&xrd.wantprot=gsi,unix, flags: none) ) with status: [ERROR] Error response: no such file or directory.
[2025-05-18 10:52:11.062588 +0100][Debug ][ExDbgMsg ] [otter12.grid.surfsara.nl:21094] Destroying MsgHandler: 0x128b650.
DEBUG:root:gfal.Default: closing protocol connection
DEBUG:root:[{'hostname': 'otter12.grid.surfsara.nl', 'scheme': 'root', 'port': 21094, 'prefix': '/pnfs/grid.sara.nl/data/dune/disk/RSE', 'impl': 'rucio.rse.protocols.gfal.Default', 'domains': {'lan': {'read': 1, 'write': 2, 'delete': 2}, 'wan': {'read': 1, 'write': 2, 'delete': 2, 'third_party_copy_read': 10, 'third_party_copy_write': 10}}, 'extended_attributes': None}, {'hostname': 'webdav.grid.surfsara.nl', 'scheme': 'davs', 'port': 2880, 'prefix': '/pnfs/grid.sara.nl/data/dune/disk/RSE', 'impl': 'rucio.rse.protocols.gfal.Default', 'domains': {'lan': {'read': 2, 'write': 1, 'delete': 1}, 'wan': {'read': 2, 'write': 1, 'delete': 1, 'third_party_copy_read': 1, 'third_party_copy_write': 1}}, 'extended_attributes': None}]
INFO:root:Trying upload with davs to SURFSARA
DEBUG:root:Processing upload with the domain: wan
DEBUG:root:gfal.Default: connecting to storage
DEBUG:root:The PFN created from the LFN: davs://webdav.grid.surfsara.nl:2880/pnfs/grid.sara.nl/data/dune/disk/RSE/testpro/8a/f8/awt-1747561765-ovvj11ypXX
DEBUG:root:gfal.Default: checking if file exists davs://webdav.grid.surfsara.nl:2880/pnfs/grid.sara.nl/data/dune/disk/RSE/testpro/8a/f8/awt-1747561765-ovvj11ypXX
DEBUG:root:gfal.Default: checking if file exists davs://webdav.grid.surfsara.nl:2880/pnfs/grid.sara.nl/data/dune/disk/RSE/testpro/8a/f8/awt-1747561765-ovvj11ypXX.rucio.upload
DEBUG:root:put: Attempt 1
DEBUG:root:gfal.Default: uploading file from awt-1747561765-ovvj11ypXX to davs://webdav.grid.surfsara.nl:2880/pnfs/grid.sara.nl/data/dune/disk/RSE/testpro/8a/f8/awt-1747561765-ovvj11ypXX.rucio.upload
INFO:root:Successful upload of temporary file. davs://webdav.grid.surfsara.nl:2880/pnfs/grid.sara.nl/data/dune/disk/RSE/testpro/8a/f8/awt-1747561765-ovvj11ypXX.rucio.upload
DEBUG:root:skip_upload_stat=False
DEBUG:root:stat: pfn=davs://webdav.grid.surfsara.nl:2880/pnfs/grid.sara.nl/data/dune/disk/RSE/testpro/8a/f8/awt-1747561765-ovvj11ypXX.rucio.upload
DEBUG:root:gfal.Default: getting stats of file davs://webdav.grid.surfsara.nl:2880/pnfs/grid.sara.nl/data/dune/disk/RSE/testpro/8a/f8/awt-1747561765-ovvj11ypXX.rucio.upload
DEBUG:root:Filesize: Expected=26 Found=26
DEBUG:root:Checksum: Expected=63e90782 Found=63e90782
DEBUG:root:Renaming file davs://webdav.grid.surfsara.nl:2880/pnfs/grid.sara.nl/data/dune/disk/RSE/testpro/8a/f8/awt-1747561765-ovvj11ypXX.rucio.upload to davs://webdav.grid.surfsara.nl:2880/pnfs/grid.sara.nl/data/dune/disk/RSE/testpro/8a/f8/awt-1747561765-ovvj11ypXX
DEBUG:root:gfal.Default: renaming file from davs://webdav.grid.surfsara.nl:2880/pnfs/grid.sara.nl/data/dune/disk/RSE/testpro/8a/f8/awt-1747561765-ovvj11ypXX.rucio.upload to davs://webdav.grid.surfsara.nl:2880/pnfs/grid.sara.nl/data/dune/disk/RSE/testpro/8a/f8/awt-1747561765-ovvj11ypXX
DEBUG:root:gfal.Default: closing protocol connection
DEBUG:root:Upload done.
INFO:root:Successfully uploaded file awt-1747561765-ovvj11ypXX
DEBUG:urllib3.connectionpool:Starting new HTTPS connection (1): dune-rucio.fnal.gov:443
/cvmfs/dune.opensciencegrid.org/products/dune/rucio/v37_1_0_post1/NULL/lib/python3.9/site-packages/urllib3/connectionpool.py:1061: InsecureRequestWarning: Unverified HTTPS request is being made to host 'dune-rucio.fnal.gov'. Adding certificate verification is strongly advised. See: https://urllib3.readthedocs.io/en/1.26.x/advanced-usage.html#ssl-warnings
warnings.warn(
DEBUG:urllib3.connectionpool:https://dune-rucio.fnal.gov:443 "POST /traces/ HTTP/1.1" 404 207
DEBUG:urllib3.connectionpool:https://dune-rucio.fnal.gov:443 "PUT /replicas HTTP/1.1" 200 0
DEBUG:urllib3.connectionpool:https://dune-rucio.fnal.gov:443 "POST /dids/testpro/awt-uploads-202519/dids HTTP/1.1" 201 7
DEBUG:urllib3.connectionpool:Starting new HTTPS connection (1): dune-rucio.fnal.gov:443
DEBUG:urllib3.connectionpool:https://dune-rucio.fnal.gov:443 "POST /replicas/list HTTP/1.1" 200 None
DEBUG:urllib3.connectionpool:Starting new HTTPS connection (1): dune-rucio.fnal.gov:443
DEBUG:urllib3.connectionpool:https://dune-rucio.fnal.gov:443 "GET /dids/testpro/awt-uploads-202519/files HTTP/1.1" 200 None
--- Upload try 1/1
--- Rucio upload 1/1 returns 0
--- Replica check try 1/1
--- Dataset awt-uploads-202519 check try 1/1
--- Upload, replicas, and datasets checks passed
[2025-05-18 10:52:14.319743 +0100][Debug ][JobMgr ] Stopping the job manager...
[2025-05-18 10:52:14.320015 +0100][Debug ][JobMgr ] Job manager stopped
[2025-05-18 10:52:14.320027 +0100][Debug ][TaskMgr ] Stopping the task manager...
[2025-05-18 10:52:14.320080 +0100][Debug ][TaskMgr ] Task manager stopped
[2025-05-18 10:52:14.320086 +0100][Debug ][Poller ] Stopping the poller...
[2025-05-18 10:52:14.320317 +0100][Debug ][AsyncSock ] [otter12.grid.surfsara.nl:21094.0] Closing the socket
[2025-05-18 10:52:14.320328 +0100][Debug ][Poller ] <[::ffff:192.41.105.56]:54122><--><[::ffff:145.100.34.53]:21094> Removing socket from the poller
[2025-05-18 10:52:14.320443 +0100][Debug ][PostMaster ] [otter12.grid.surfsara.nl:21094] Destroying stream
[2025-05-18 10:52:14.320452 +0100][Debug ][AsyncSock ] [otter12.grid.surfsara.nl:21094.0] Closing the socket
'justin-rucio-upload --rse SURFSARA --protocol davs --scope testpro --dataset awt-uploads-202519 awt-1747561765-ovvj11ypXX --timeout 1200' returns 0
subject : /C=UK/O=eScience/OU=Manchester/L=HEP/CN=justin-jobs-production.dune.hep.ac.uk/CN=3392666714/CN=174756176141
issuer : /C=UK/O=eScience/OU=Manchester/L=HEP/CN=justin-jobs-production.dune.hep.ac.uk/CN=3392666714
identity : /C=UK/O=eScience/OU=Manchester/L=HEP/CN=justin-jobs-production.dune.hep.ac.uk/CN=3392666714
type : RFC compliant proxy
strength : 2048 bits
path : /home/awt-proxy.pem
timeleft : 167:57:07
key usage : Digital Signature, Key Encipherment, Key Agreement
=== VO dune extension information ===
VO : dune
subject : /C=UK/O=eScience/OU=Manchester/L=HEP/CN=justin-jobs-production.dune.hep.ac.uk
issuer : /DC=org/DC=incommon/C=US/ST=Illinois/O=Fermi Research Alliance/CN=voms2.fnal.gov
attribute : /dune/Role=Production/Capability=NULL
attribute : /dune/Role=NULL/Capability=NULL
timeleft : 161:47:49
uri : voms2.fnal.gov:15042
===== Results =====
Download/upload commands:
xrdcp --force --nopbar --verbose $read_pfn downloaded.txt
echo '{"namespace":"testpro","name":"FILENAME","size":0}' >tmp.json
metacat file declare --json -f tmp.json "dune:all"
justin-rucio-upload --rse $rse_name --protocol $write_protocol --scope testpro --dataset awt-uploads-202519 --timeout 1200 FILENAME
Use the wrapper job link on the page for the job on the justIN Dashboard to find the full log file, with errors from these commands
Each line: $JUSTIN_SITE_NAME $rse_name $download_retval $upload_retval $read_pfn $write_protocol
==awt== UK_Edinburgh DUNE_CA_SFU 0 0 root://lcg-dunese1.sfu.computecanada.ca:1094//dune/RSE/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== UK_Edinburgh DUNE_CERN_EOS 0 0 root://eospublic.cern.ch:1094//eos/experiment/neutplatform/protodune/dune/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== UK_Edinburgh DUNE_ES_PIC 0 0 root://xrootd.pic.es:1094/pnfs/pic.es/data/dune/RSE/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== UK_Edinburgh DUNE_FR_CCIN2P3_DISK 0 0 root://ccxrootdegee.in2p3.fr:1094/pnfs/in2p3.fr/data/dune/disk/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== UK_Edinburgh DUNE_IT_INFN_CNAF 51 99 root://xrootd-archive.cr.cnaf.infn.it:1096//dune/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== UK_Edinburgh DUNE_UK_GLASGOW 52 99 root://cephc02.gla.scotgrid.ac.uk:1094//cephfs/dune/RSE/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== UK_Edinburgh DUNE_UK_LANCASTER_CEPH 0 0 root://xgate.hec.lancs.ac.uk:1094//cephfs/grid/dune/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== UK_Edinburgh DUNE_UK_MANCHESTER_CEPH 0 0 root://meitner.tier2.hep.manchester.ac.uk:1094//cephfs/experiments/dune/RSE/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== UK_Edinburgh DUNE_US_BNL_SDCC 0 0 root://dcdndoor.sdcc.bnl.gov:1094//pnfs/sdcc.bnl.gov/data/dune/RSE/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== UK_Edinburgh DUNE_US_FNAL_DISK_STAGE 0 0 root://fndca1.fnal.gov:1094/pnfs/fnal.gov/usr/dune/persistent/staging/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== UK_Edinburgh NIKHEF 0 0 root://dune.dcache.nikhef.nl:1094/pnfs/nikhef.nl/data/dune/generic/rucio/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== UK_Edinburgh PRAGUE 0 0 root://golias100.farm.particle.cz:1094/dpm/farm.particle.cz/home/dune/RSE/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== UK_Edinburgh QMUL 51 99 root://xrootd1.esc.qmul.ac.uk:1094//dune/RSE/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== UK_Edinburgh RAL-PP 0 0 root://mover.pp.rl.ac.uk:1094/pnfs/pp.rl.ac.uk/data/dune/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== UK_Edinburgh RAL_ECHO 0 0 root://xrootd.echo.stfc.ac.uk:1094/dune:/protodune/RSE/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== UK_Edinburgh SURFSARA 0 0 root://otter12.grid.surfsara.nl:21094/pnfs/grid.sara.nl/data/dune/disk/RSE/testpro/bb/7f/awt-download-2023-03-07-01.txt davs