Jobsub ID 284942.0@justin-prod-sched01.dune.hep.ac.uk
| Jobsub ID | 284942.0@justin-prod-sched01.dune.hep.ac.uk |
| Workflow Testing | Yes |
| Workflow ID | 500 |
| Stage ID | 1 |
| User name | amcnab@fnal.gov |
| HTCondor Group | group_dune |
| Requested | Processors | 1 |
| GPU | No |
| RSS bytes | 1073741824 (1024 MiB) |
| Wall seconds limit | 3600 (1 hours) |
| Submitted time | 2024-11-06 16:59:34 |
| Site | CZ_FZU |
| Entry | Nova_CZ_FZU_osgce2 |
| Last heartbeat | 2024-11-06 18:34:16 |
| From worker node | Hostname | mikan30.farm.particle.cz |
| cpuinfo | Intel(R) Xeon(R) CPU E5-2650 v4 @ 2.20GHz |
| OS release | Scientific Linux release 7.9 (Nitrogen) |
| Processors | 1 |
| RSS bytes | 1073741824 (1024 MiB) |
| Wall seconds limit | 172800 (48 hours) |
| GPU | |
| Inner Apptainer? | True |
| Job state | finished |
| Allocator name | justin-allocator-int.dune.hep.ac.uk |
| Started | 2024-11-06 17:00:49 |
| Input files | |
| Jobscript | Exit code | 0 |
| Real time | 1h (4843s) |
| CPU time | 0m (27s = 0%) |
| Outputting started | 2024-11-06 18:21:32 |
| Output files | |
| Finished | 2024-11-06 18:34:16 |
| Saved logs | justin-logs:284942.0-justin-prod-sched01.dune.hep.ac.uk.logs.tgz |
| List job events Wrapper job log |
Jobscript log (last 10,000 characters)
thon3.9/site-packages/urllib3/response.py", line 857, in read_chunked
self._original_response.close()
File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_13/Linux64bit+3.10-2.17/lib/python3.9/contextlib.py", line 137, in __exit__
self.gen.throw(typ, value, traceback)
File "/cvmfs/dune.opensciencegrid.org/products/dune/rucio/v35_4_0/NULL/lib/python3.9/site-packages/urllib3/response.py", line 461, in _error_catcher
raise ProtocolError("Connection broken: %r" % e, e)
urllib3.exceptions.ProtocolError: ("Connection broken: InvalidChunkLength(got length b'', 0 bytes read)", InvalidChunkLength(got length b'', 0 bytes read))
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/cvmfs/dune.opensciencegrid.org/products/dune/justin/01.01.04/NULL/bin/justin-rucio-upload", line 215, in <module>
for file in filesGen:
File "/cvmfs/dune.opensciencegrid.org/products/dune/rucio/v35_4_0/NULL/lib/python3.9/site-packages/rucio/client/baseclient.py", line 374, in _load_json_data
for line in response.iter_lines():
File "/cvmfs/dune.opensciencegrid.org/products/dune/rucio/v35_4_0/NULL/lib/python3.9/site-packages/requests/models.py", line 869, in iter_lines
for chunk in self.iter_content(
File "/cvmfs/dune.opensciencegrid.org/products/dune/rucio/v35_4_0/NULL/lib/python3.9/site-packages/requests/models.py", line 822, in generate
raise ChunkedEncodingError(e)
requests.exceptions.ChunkedEncodingError: ("Connection broken: InvalidChunkLength(got length b'', 0 bytes read)", InvalidChunkLength(got length b'', 0 bytes read))
'justin-rucio-upload --rse RAL_ECHO --protocol davs --scope testpro --dataset awt-uploads-202445 awt-1730912453-xpSQKMZpwV --timeout 1200' returns 1
---------------------------------------------------------------------
CZ_FZU SURFSARA davs root://penguin12.grid.surfsara.nl:21094/pnfs/grid.sara.nl/data/dune/disk/RSE/testpro/bb/7f/awt-download-2023-03-07-01.txt
'xrdcp --force --nopbar --verbose root://penguin12.grid.surfsara.nl:21094/pnfs/grid.sara.nl/data/dune/disk/RSE/testpro/bb/7f/awt-download-2023-03-07-01.txt downloaded.txt' returns 0
{
"created_timestamp": null,
"creator": "dunepro",
"fid": "8YzOB1e3RQu3vvu6",
"metadata": {},
"name": "awt-1730912453-Rxfsx9N7cF",
"namespace": "testpro",
"retired": false,
"retired_by": null,
"retired_timestamp": null,
"size": 0,
"updated_by": null,
"updated_timestamp": null
}
metacat file declare returns 0
GFAL_CONFIG_DIR: GFAL_PLUGIN_DIR:
justin-rucio-upload attempt 1
DEBUG:root:Num. of files that upload client is processing: 1
DEBUG:dogpile.cache.region:No value present for key: "host_to_choose_choice['https://dune-rucio.fnal.gov']"
DEBUG:dogpile.lock:NeedRegenerationException
DEBUG:dogpile.lock:no value, waiting for create lock
DEBUG:dogpile.lock:value creation lock <dogpile.cache.region.CacheRegion._LockWrapper object at 0x14dfc19ed580> acquired
DEBUG:dogpile.cache.region:No value present for key: "host_to_choose_choice['https://dune-rucio.fnal.gov']"
DEBUG:dogpile.lock:Calling creation function for not-yet-present value
DEBUG:dogpile.cache.region:Cache value generated in 0.000 seconds for key(s): "host_to_choose_choice['https://dune-rucio.fnal.gov']"
DEBUG:dogpile.lock:Released creation lock
DEBUG:urllib3.connectionpool:Starting new HTTPS connection (1): dune-rucio.fnal.gov:443
DEBUG:urllib3.connectionpool:https://dune-rucio.fnal.gov:443 "GET /rses/?expression=SURFSARA HTTP/1.1" 503 299
[33;1m2024-11-06 19:19:05,165 WARNING Waiting 0.25s due to reason: server returned 503 [0m
WARNING:baseclient:Waiting 0.25s due to reason: server returned 503
DEBUG:urllib3.connectionpool:Starting new HTTPS connection (2): dune-rucio.fnal.gov:443
DEBUG:urllib3.connectionpool:https://dune-rucio.fnal.gov:443 "GET /rses/?expression=SURFSARA HTTP/1.1" 200 None
DEBUG:urllib3.connectionpool:Starting new HTTPS connection (1): dune-rucio.fnal.gov:443
DEBUG:urllib3.connectionpool:https://dune-rucio.fnal.gov:443 "GET /rses/SURFSARA HTTP/1.1" 200 1260
DEBUG:root:Input validation done.
INFO:root:Preparing upload for file awt-1730912453-Rxfsx9N7cF
DEBUG:dogpile.lock:value creation lock <dogpile.cache.region.CacheRegion._LockWrapper object at 0x14dfc19ddb50> acquired
DEBUG:dogpile.lock:Calling creation function for previously expired value
DEBUG:dogpile.cache.region:Cache value generated in 0.000 seconds for key(s): "host_to_choose_choice['https://dune-rucio.fnal.gov']"
DEBUG:dogpile.lock:Released creation lock
DEBUG:urllib3.connectionpool:Resetting dropped connection: dune-rucio.fnal.gov
DEBUG:urllib3.connectionpool:https://dune-rucio.fnal.gov:443 "GET /rses/SURFSARA/attr/ HTTP/1.1" 503 299
[33;1m2024-11-06 19:20:15,199 WARNING Waiting 0.25s due to reason: server returned 503 [0m
WARNING:baseclient:Waiting 0.25s due to reason: server returned 503
DEBUG:urllib3.connectionpool:Starting new HTTPS connection (3): dune-rucio.fnal.gov:443
DEBUG:urllib3.connectionpool:https://dune-rucio.fnal.gov:443 "GET /rses/SURFSARA/attr/ HTTP/1.1" 200 308
DEBUG:root:wan domain is used for the upload
DEBUG:root:Registering file
DEBUG:urllib3.connectionpool:https://dune-rucio.fnal.gov:443 "GET /accounts/dunepro/scopes/ HTTP/1.1" 503 299
[33;1m2024-11-06 19:20:59,759 WARNING Waiting 0.25s due to reason: server returned 503 [0m
WARNING:baseclient:Waiting 0.25s due to reason: server returned 503
DEBUG:urllib3.connectionpool:Starting new HTTPS connection (4): dune-rucio.fnal.gov:443
DEBUG:urllib3.connectionpool:https://dune-rucio.fnal.gov:443 "GET /accounts/dunepro/scopes/ HTTP/1.1" 503 299
[33;1m2024-11-06 19:21:15,568 WARNING Waiting 0.5s due to reason: server returned 503 [0m
WARNING:baseclient:Waiting 0.5s due to reason: server returned 503
DEBUG:urllib3.connectionpool:Starting new HTTPS connection (5): dune-rucio.fnal.gov:443
DEBUG:urllib3.connectionpool:https://dune-rucio.fnal.gov:443 "GET /accounts/dunepro/scopes/ HTTP/1.1" 503 299
[33;1m2024-11-06 19:21:31,737 WARNING Waiting 1.0s due to reason: server returned 503 [0m
WARNING:baseclient:Waiting 1.0s due to reason: server returned 503
--- Upload try 1/1
--- Rucio upload 1/1 fails: An unknown exception occurred.
Details: no error information passed (http status code: 503)
--- Exit with 99
'justin-rucio-upload --rse SURFSARA --protocol davs --scope testpro --dataset awt-uploads-202445 awt-1730912453-Rxfsx9N7cF --timeout 1200' returns 99
subject : /C=UK/O=eScience/OU=Manchester/L=HEP/CN=justin-jobs-production.dune.hep.ac.uk/CN=1949346042/CN=173091244901
issuer : /C=UK/O=eScience/OU=Manchester/L=HEP/CN=justin-jobs-production.dune.hep.ac.uk/CN=1949346042
identity : /C=UK/O=eScience/OU=Manchester/L=HEP/CN=justin-jobs-production.dune.hep.ac.uk/CN=1949346042
type : RFC compliant proxy
strength : 2048 bits
path : /home/awt-proxy.pem
timeleft : 166:39:17
key usage : Digital Signature, Key Encipherment, Key Agreement
=== VO dune extension information ===
VO : dune
subject : /C=UK/O=eScience/OU=Manchester/L=HEP/CN=justin-jobs-production.dune.hep.ac.uk
issuer : /DC=org/DC=incommon/C=US/ST=Illinois/O=Fermi Research Alliance/CN=voms1.fnal.gov
attribute : /dune/Role=Production/Capability=NULL
attribute : /dune/Role=NULL/Capability=NULL
timeleft : 152:49:31
uri : voms1.fnal.gov:15042
===== Results =====
Download/upload commands:
xrdcp --force --nopbar --verbose $read_pfn downloaded.txt
echo '{"namespace":"testpro","name":"FILENAME","size":0}' >tmp.json
metacat file declare --json -f tmp.json "dune:all"
justin-rucio-upload --rse $rse_name --protocol $write_protocol --scope testpro --dataset awt-uploads-202445 --timeout 1200 FILENAME
Use the wrapper job link on the page for the job on the justIN Dashboard to find the full log file, with errors from these commands
Each line: $JUSTIN_SITE_NAME $rse_name $download_retval $upload_retval $read_pfn $write_protocol
==awt== CZ_FZU DUNE_CERN_EOS 0 99 root://eospublic.cern.ch:1094//eos/experiment/neutplatform/protodune/dune/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== CZ_FZU DUNE_ES_PIC 0 0 root://xrootd.pic.es:1094/pnfs/pic.es/data/dune/RSE/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== CZ_FZU DUNE_FR_CCIN2P3_DISK 0 99 root://ccxrootdegee.in2p3.fr:1094/pnfs/in2p3.fr/data/dune/disk/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== CZ_FZU DUNE_UK_GLASGOW 0 99 root://cephc02.gla.scotgrid.ac.uk:1094//cephfs/dune/RSE/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== CZ_FZU DUNE_UK_LANCASTER_CEPH 0 99 root://xgate.hec.lancs.ac.uk:1094//cephfs/grid/dune/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== CZ_FZU DUNE_UK_MANCHESTER_CEPH 0 0 root://meitner.tier2.hep.manchester.ac.uk:1094//cephfs/experiments/dune/RSE/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== CZ_FZU DUNE_US_BNL_SDCC 0 97 root://dcdndoor.sdcc.bnl.gov:1094//pnfs/sdcc.bnl.gov/data/dune/RSE/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== CZ_FZU DUNE_US_FNAL_DISK_STAGE 0 97 root://fndca1.fnal.gov:1094/pnfs/fnal.gov/usr/dune/persistent/staging/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== CZ_FZU NIKHEF 0 0 root://dune.dcache.nikhef.nl:1094/pnfs/nikhef.nl/data/dune/generic/rucio/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== CZ_FZU PRAGUE 0 98 root://golias100.farm.particle.cz:1094/dpm/farm.particle.cz/home/dune/RSE/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== CZ_FZU QMUL 51 98 root://xrootd01.escqmul.ac.uk:1094//dune/RSE/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== CZ_FZU RAL-PP 0 99 root://mover.pp.rl.ac.uk:1094/pnfs/pp.rl.ac.uk/data/dune/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== CZ_FZU RAL_ECHO 0 1 root://xrootd.echo.stfc.ac.uk:1094/dune:/protodune/RSE/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== CZ_FZU SURFSARA 0 99 root://penguin12.grid.surfsara.nl:21094/pnfs/grid.sara.nl/data/dune/disk/RSE/testpro/bb/7f/awt-download-2023-03-07-01.txt davs 