Jobsub ID 297279.0@justin-prod-sched01.dune.hep.ac.uk
| Jobsub ID | 297279.0@justin-prod-sched01.dune.hep.ac.uk |
| Workflow Testing | Yes |
| Workflow ID | 500 |
| Stage ID | 1 |
| User name | amcnab@fnal.gov |
| HTCondor Group | group_dune |
| Requested | Processors | 1 |
| GPU | No |
| RSS bytes | 1073741824 (1024 MiB) |
| Wall seconds limit | 3600 (1 hours) |
| Submitted time | 2024-11-19 17:14:55 |
| Site | UK_Edinburgh |
| Entry | DUNE_UK_SGridECDF_ce1_multicore |
| Last heartbeat | 2024-11-19 17:18:16 |
| From worker node | Hostname | node2a02.ecdf.ed.ac.uk |
| cpuinfo | Intel(R) Xeon(R) Gold 6130 CPU @ 2.10GHz |
| OS release | Scientific Linux release 7.9 (Nitrogen) |
| Processors | 1 |
| RSS bytes | 1073741824 (1024 MiB) |
| Wall seconds limit | 171000 (47 hours) |
| GPU | |
| Inner Apptainer? | True |
| Job state | outputting_failed |
| Allocator name | justin-allocator-int.dune.hep.ac.uk |
| Started | 2024-11-19 17:15:54 |
| Input files | |
| Jobscript | Exit code | 0 |
| Real time | 2m (126s) |
| CPU time | 0m (18s = 14%) |
| Outputting started | 2024-11-19 17:18:01 |
| Output files | |
| Finished | 2024-11-19 17:18:16 |
| List job events Wrapper job log |
Jobscript log (last 10,000 characters)
, flags: none) ).
[2024-11-19 17:17:58.049200 +0000][Debug ][ExDbgMsg ] [penguin12.grid.surfsara.nl:21094] Moving MsgHandler: 0xf63ee0 (message: kXR_stat (path: pnfs/grid.sara.nl/data/dune/disk/RSE/testpro/f2/ce?xrd.gsiusrpxy=/home/awt-proxy.pem&xrd.wantprot=gsi,unix, flags: none) ) from out-queue to in-queue.
[2024-11-19 17:17:58.073497 +0000][Debug ][ExDbgMsg ] [msg: 0xf69840] Assigned MsgHandler: 0xf63ee0.
[2024-11-19 17:17:58.073511 +0000][Debug ][ExDbgMsg ] [handler: 0xf63ee0] Removed MsgHandler: 0xf63ee0 from the in-queue.
[2024-11-19 17:17:58.073545 +0000][Debug ][ExDbgMsg ] [penguin12.grid.surfsara.nl:21094] Calling MsgHandler: 0xf63ee0 (message: kXR_stat (path: pnfs/grid.sara.nl/data/dune/disk/RSE/testpro/f2/ce?xrd.gsiusrpxy=/home/awt-proxy.pem&xrd.wantprot=gsi,unix, flags: none) ) with status: [SUCCESS] .
[2024-11-19 17:17:58.073562 +0000][Debug ][ExDbgMsg ] [penguin12.grid.surfsara.nl:21094] Destroying MsgHandler: 0xf63ee0.
[2024-11-19 17:17:58.074405 +0000][Debug ][ExDbgMsg ] [penguin12.grid.surfsara.nl:21094] MsgHandler created: 0xf93e50 (message: kXR_mv (source: pnfs/grid.sara.nl/data/dune/disk/RSE/testpro/f2/ce/awt-1732036559-DcuqsOL9Cy.rucio.upload?xrd.gsiusrpxy=/home/awt-proxy.pem&xrd.wantprot=gsi,unix, destination: pnfs/grid.sara.nl/data/dune/disk/RSE/testpro/f2/ce/awt-1732036559-DcuqsOL9Cy?xrd.gsiusrpxy=/home/awt-proxy.pem&xrd.wantprot=gsi,unix) ).
[2024-11-19 17:17:58.074457 +0000][Debug ][ExDbgMsg ] [penguin12.grid.surfsara.nl:21094] Moving MsgHandler: 0xf93e50 (message: kXR_mv (source: pnfs/grid.sara.nl/data/dune/disk/RSE/testpro/f2/ce/awt-1732036559-DcuqsOL9Cy.rucio.upload?xrd.gsiusrpxy=/home/awt-proxy.pem&xrd.wantprot=gsi,unix, destination: pnfs/grid.sara.nl/data/dune/disk/RSE/testpro/f2/ce/awt-1732036559-DcuqsOL9Cy?xrd.gsiusrpxy=/home/awt-proxy.pem&xrd.wantprot=gsi,unix) ) from out-queue to in-queue.
[2024-11-19 17:17:58.099564 +0000][Debug ][ExDbgMsg ] [msg: 0xf6e320] Assigned MsgHandler: 0xf93e50.
[2024-11-19 17:17:58.099580 +0000][Debug ][ExDbgMsg ] [handler: 0xf93e50] Removed MsgHandler: 0xf93e50 from the in-queue.
[2024-11-19 17:17:58.099609 +0000][Debug ][ExDbgMsg ] [penguin12.grid.surfsara.nl:21094] Calling MsgHandler: 0xf93e50 (message: kXR_mv (source: pnfs/grid.sara.nl/data/dune/disk/RSE/testpro/f2/ce/awt-1732036559-DcuqsOL9Cy.rucio.upload?xrd.gsiusrpxy=/home/awt-proxy.pem&xrd.wantprot=gsi,unix, destination: pnfs/grid.sara.nl/data/dune/disk/RSE/testpro/f2/ce/awt-1732036559-DcuqsOL9Cy?xrd.gsiusrpxy=/home/awt-proxy.pem&xrd.wantprot=gsi,unix) ) with status: [SUCCESS] .
[2024-11-19 17:17:58.099629 +0000][Debug ][ExDbgMsg ] [penguin12.grid.surfsara.nl:21094] Destroying MsgHandler: 0xf93e50.
DEBUG:root:gfal.Default: closing protocol connection
DEBUG:root:Upload done.
INFO:root:Successfully uploaded file awt-1732036559-DcuqsOL9Cy
DEBUG:urllib3.connectionpool:Starting new HTTPS connection (1): dune-rucio.fnal.gov:443
/cvmfs/dune.opensciencegrid.org/products/dune/rucio/v35_4_0/NULL/lib/python3.9/site-packages/urllib3/connectionpool.py:1061: InsecureRequestWarning: Unverified HTTPS request is being made to host 'dune-rucio.fnal.gov'. Adding certificate verification is strongly advised. See: https://urllib3.readthedocs.io/en/1.26.x/advanced-usage.html#ssl-warnings
warnings.warn(
DEBUG:urllib3.connectionpool:https://dune-rucio.fnal.gov:443 "POST /traces/ HTTP/1.1" 404 207
DEBUG:urllib3.connectionpool:https://dune-rucio.fnal.gov:443 "PUT /replicas HTTP/1.1" 200 0
DEBUG:urllib3.connectionpool:https://dune-rucio.fnal.gov:443 "POST /dids/testpro/awt-uploads-202447/dids HTTP/1.1" 201 7
DEBUG:urllib3.connectionpool:Starting new HTTPS connection (1): dune-rucio.fnal.gov:443
DEBUG:urllib3.connectionpool:https://dune-rucio.fnal.gov:443 "POST /replicas/list HTTP/1.1" 200 None
DEBUG:urllib3.connectionpool:Starting new HTTPS connection (1): dune-rucio.fnal.gov:443
DEBUG:urllib3.connectionpool:https://dune-rucio.fnal.gov:443 "GET /dids/testpro/awt-uploads-202447/files HTTP/1.1" 200 None
--- Upload try 1/1
--- Rucio upload 1/1 returns 0
--- Replica check try 1/1
--- Dataset awt-uploads-202447 check try 1/1
--- Upload, replicas, and datasets checks passed
[2024-11-19 17:18:00.994716 +0000][Debug ][JobMgr ] Stopping the job manager...
[2024-11-19 17:18:00.994930 +0000][Debug ][JobMgr ] Job manager stopped
[2024-11-19 17:18:00.994943 +0000][Debug ][TaskMgr ] Stopping the task manager...
[2024-11-19 17:18:00.995032 +0000][Debug ][TaskMgr ] Task manager stopped
[2024-11-19 17:18:00.995040 +0000][Debug ][Poller ] Stopping the poller...
[2024-11-19 17:18:00.995534 +0000][Debug ][AsyncSock ] [badger12.grid.surfsara.nl:33245.0] Closing the socket
[2024-11-19 17:18:00.995549 +0000][Debug ][Poller ] <[::ffff:192.41.105.3]:59754><--><[::ffff:145.100.34.12]:33245> Removing socket from the poller
[2024-11-19 17:18:00.995654 +0000][Debug ][PostMaster ] [badger12.grid.surfsara.nl:33245] Destroying stream
[2024-11-19 17:18:00.995664 +0000][Debug ][AsyncSock ] [badger12.grid.surfsara.nl:33245.0] Closing the socket
[2024-11-19 17:18:00.995683 +0000][Debug ][AsyncSock ] [penguin12.grid.surfsara.nl:21094.0] Closing the socket
[2024-11-19 17:18:00.995689 +0000][Debug ][Poller ] <[::ffff:192.41.105.3]:45798><--><[::ffff:145.100.33.182]:21094> Removing socket from the poller
[2024-11-19 17:18:00.995735 +0000][Debug ][PostMaster ] [penguin12.grid.surfsara.nl:21094] Destroying stream
[2024-11-19 17:18:00.995742 +0000][Debug ][AsyncSock ] [penguin12.grid.surfsara.nl:21094.0] Closing the socket
[2024-11-19 17:18:00.995753 +0000][Debug ][AsyncSock ] [penguin12.grid.surfsara.nl:21094.0] Closing the socket
[2024-11-19 17:18:00.995759 +0000][Debug ][Poller ] <[::ffff:192.41.105.3]:45812><--><[::ffff:145.100.33.182]:21094> Removing socket from the poller
[2024-11-19 17:18:00.995850 +0000][Debug ][PostMaster ] [penguin12.grid.surfsara.nl:21094] Destroying stream
[2024-11-19 17:18:00.995857 +0000][Debug ][AsyncSock ] [penguin12.grid.surfsara.nl:21094.0] Closing the socket
'justin-rucio-upload --rse SURFSARA --protocol davs --scope testpro --dataset awt-uploads-202447 awt-1732036559-DcuqsOL9Cy --timeout 1200' returns 0
subject : /C=UK/O=eScience/OU=Manchester/L=HEP/CN=justin-jobs-production.dune.hep.ac.uk/CN=729403258/CN=173203655489
issuer : /C=UK/O=eScience/OU=Manchester/L=HEP/CN=justin-jobs-production.dune.hep.ac.uk/CN=729403258
identity : /C=UK/O=eScience/OU=Manchester/L=HEP/CN=justin-jobs-production.dune.hep.ac.uk/CN=729403258
type : RFC compliant proxy
strength : 2048 bits
path : /home/awt-proxy.pem
timeleft : 167:57:53
key usage : Digital Signature, Key Encipherment, Key Agreement
=== VO dune extension information ===
VO : dune
subject : /C=UK/O=eScience/OU=Manchester/L=HEP/CN=justin-jobs-production.dune.hep.ac.uk
issuer : /DC=org/DC=incommon/C=US/ST=Illinois/O=Fermi Research Alliance/CN=voms1.fnal.gov
attribute : /dune/Role=Production/Capability=NULL
attribute : /dune/Role=NULL/Capability=NULL
timeleft : 154:30:02
uri : voms1.fnal.gov:15042
===== Results =====
Download/upload commands:
xrdcp --force --nopbar --verbose $read_pfn downloaded.txt
echo '{"namespace":"testpro","name":"FILENAME","size":0}' >tmp.json
metacat file declare --json -f tmp.json "dune:all"
justin-rucio-upload --rse $rse_name --protocol $write_protocol --scope testpro --dataset awt-uploads-202447 --timeout 1200 FILENAME
Use the wrapper job link on the page for the job on the justIN Dashboard to find the full log file, with errors from these commands
Each line: $JUSTIN_SITE_NAME $rse_name $download_retval $upload_retval $read_pfn $write_protocol
==awt== UK_Edinburgh DUNE_CERN_EOS 0 0 root://eospublic.cern.ch:1094//eos/experiment/neutplatform/protodune/dune/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== UK_Edinburgh DUNE_ES_PIC 0 0 root://xrootd.pic.es:1094/pnfs/pic.es/data/dune/RSE/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== UK_Edinburgh DUNE_FR_CCIN2P3_DISK 0 0 root://ccxrootdegee.in2p3.fr:1094/pnfs/in2p3.fr/data/dune/disk/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== UK_Edinburgh DUNE_UK_GLASGOW 0 0 root://cephc02.gla.scotgrid.ac.uk:1094//cephfs/dune/RSE/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== UK_Edinburgh DUNE_UK_LANCASTER_CEPH 0 0 root://xgate.hec.lancs.ac.uk:1094//cephfs/grid/dune/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== UK_Edinburgh DUNE_UK_MANCHESTER_CEPH 0 0 root://meitner.tier2.hep.manchester.ac.uk:1094//cephfs/experiments/dune/RSE/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== UK_Edinburgh DUNE_US_BNL_SDCC 0 0 root://dcdndoor.sdcc.bnl.gov:1094//pnfs/sdcc.bnl.gov/data/dune/RSE/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== UK_Edinburgh DUNE_US_FNAL_DISK_STAGE 0 0 root://fndca1.fnal.gov:1094/pnfs/fnal.gov/usr/dune/persistent/staging/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== UK_Edinburgh NIKHEF 0 0 root://dune.dcache.nikhef.nl:1094/pnfs/nikhef.nl/data/dune/generic/rucio/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== UK_Edinburgh PRAGUE 0 0 root://golias100.farm.particle.cz:1094/dpm/farm.particle.cz/home/dune/RSE/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== UK_Edinburgh QMUL 51 0 root://xrootd01.escqmul.ac.uk:1094//dune/RSE/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== UK_Edinburgh RAL-PP 0 0 root://mover.pp.rl.ac.uk:1094/pnfs/pp.rl.ac.uk/data/dune/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== UK_Edinburgh RAL_ECHO 0 0 root://xrootd.echo.stfc.ac.uk:1094/dune:/protodune/RSE/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== UK_Edinburgh SURFSARA 0 0 root://penguin12.grid.surfsara.nl:21094/pnfs/grid.sara.nl/data/dune/disk/RSE/testpro/bb/7f/awt-download-2023-03-07-01.txt davs 