Jobsub ID 92192.0@justin-prod-sched02.dune.hep.ac.uk
| Jobsub ID | 92192.0@justin-prod-sched02.dune.hep.ac.uk |
| Workflow Testing | Yes |
| Workflow ID | 500 |
| Stage ID | 1 |
| User name | amcnab@fnal.gov |
| HTCondor Group | group_dune |
| Requested | Processors | 1 |
| GPU | No |
| RSS bytes | 1073741824 (1024 MiB) |
| Wall seconds limit | 3600 (1 hours) |
| Submitted time | 2024-11-06 16:59:38 |
| Site | NL_SURFsara |
| Entry | DUNE_SurfSARA_arc02 |
| Last heartbeat | 2024-11-06 18:16:58 |
| From worker node | Hostname | wn-lb-16.gina.surfsara.nl |
| cpuinfo | AMD EPYC 9754 128-Core Processor |
| OS release | Scientific Linux release 7.9 (Nitrogen) |
| Processors | 1 |
| RSS bytes | 1073741824 (1024 MiB) |
| Wall seconds limit | 129600 (36 hours) |
| GPU | |
| Inner Apptainer? | True |
| Job state | finished |
| Allocator name | justin-allocator-int.dune.hep.ac.uk |
| Started | 2024-11-06 17:00:36 |
| Input files | |
| Jobscript | Exit code | 0 |
| Real time | 1h (3782s) |
| CPU time | 0m (20s = 0%) |
| Outputting started | 2024-11-06 18:03:39 |
| Output files | |
| Finished | 2024-11-06 18:16:58 |
| Saved logs | justin-logs:92192.0-justin-prod-sched02.dune.hep.ac.uk.logs.tgz |
| List job events Wrapper job log |
Jobscript log (last 10,000 characters)
sara.nl:21094/pnfs/grid.sara.nl/data/dune/disk/RSE/testpro/94/b7/awt-1730912441-AmnnciYCoH
DEBUG:root:gfal.Default: closing protocol connection
DEBUG:root:[{'hostname': 'webdav.grid.surfsara.nl', 'scheme': 'davs', 'port': 2880, 'prefix': '/pnfs/grid.sara.nl/data/dune/disk/RSE', 'impl': 'rucio.rse.protocols.gfal.Default', 'domains': {'lan': {'read': 2, 'write': 1, 'delete': 1}, 'wan': {'read': 2, 'write': 1, 'delete': 1, 'third_party_copy_read': 1, 'third_party_copy_write': 1}}, 'extended_attributes': None}, {'hostname': 'penguin12.grid.surfsara.nl', 'scheme': 'root', 'port': 21094, 'prefix': '/pnfs/grid.sara.nl/data/dune/disk/RSE', 'impl': 'rucio.rse.protocols.gfal.Default', 'domains': {'lan': {'read': 1, 'write': 1, 'delete': 2}, 'wan': {'read': 1, 'write': 1, 'delete': 2, 'third_party_copy_read': 10, 'third_party_copy_write': 10}}, 'extended_attributes': None}]
INFO:root:Trying upload with root to SURFSARA
DEBUG:root:Processing upload with the domain: wan
DEBUG:root:gfal.Default: connecting to storage
DEBUG:root:The PFN created from the LFN: root://penguin12.grid.surfsara.nl:21094/pnfs/grid.sara.nl/data/dune/disk/RSE/testpro/94/b7/awt-1730912441-AmnnciYCoH
DEBUG:root:gfal.Default: checking if file exists root://penguin12.grid.surfsara.nl:21094/pnfs/grid.sara.nl/data/dune/disk/RSE/testpro/94/b7/awt-1730912441-AmnnciYCoH
DEBUG:root:gfal.Default: checking if file exists root://penguin12.grid.surfsara.nl:21094/pnfs/grid.sara.nl/data/dune/disk/RSE/testpro/94/b7/awt-1730912441-AmnnciYCoH.rucio.upload
DEBUG:root:put: Attempt 1
DEBUG:root:gfal.Default: uploading file from awt-1730912441-AmnnciYCoH to root://penguin12.grid.surfsara.nl:21094/pnfs/grid.sara.nl/data/dune/disk/RSE/testpro/94/b7/awt-1730912441-AmnnciYCoH.rucio.upload
INFO:root:Successful upload of temporary file. root://penguin12.grid.surfsara.nl:21094/pnfs/grid.sara.nl/data/dune/disk/RSE/testpro/94/b7/awt-1730912441-AmnnciYCoH.rucio.upload
DEBUG:root:skip_upload_stat=False
DEBUG:root:stat: pfn=root://penguin12.grid.surfsara.nl:21094/pnfs/grid.sara.nl/data/dune/disk/RSE/testpro/94/b7/awt-1730912441-AmnnciYCoH.rucio.upload
DEBUG:root:gfal.Default: getting stats of file root://penguin12.grid.surfsara.nl:21094/pnfs/grid.sara.nl/data/dune/disk/RSE/testpro/94/b7/awt-1730912441-AmnnciYCoH.rucio.upload
DEBUG:root:Filesize: Expected=26 Found=26
DEBUG:root:Checksum: Expected=61d9075a Found=61d9075a
DEBUG:root:Renaming file root://penguin12.grid.surfsara.nl:21094/pnfs/grid.sara.nl/data/dune/disk/RSE/testpro/94/b7/awt-1730912441-AmnnciYCoH.rucio.upload to root://penguin12.grid.surfsara.nl:21094/pnfs/grid.sara.nl/data/dune/disk/RSE/testpro/94/b7/awt-1730912441-AmnnciYCoH
DEBUG:root:gfal.Default: renaming file from root://penguin12.grid.surfsara.nl:21094/pnfs/grid.sara.nl/data/dune/disk/RSE/testpro/94/b7/awt-1730912441-AmnnciYCoH.rucio.upload to root://penguin12.grid.surfsara.nl:21094/pnfs/grid.sara.nl/data/dune/disk/RSE/testpro/94/b7/awt-1730912441-AmnnciYCoH
DEBUG:root:gfal.Default: closing protocol connection
DEBUG:root:Upload done.
INFO:root:Successfully uploaded file awt-1730912441-AmnnciYCoH
DEBUG:urllib3.connectionpool:Starting new HTTPS connection (1): dune-rucio.fnal.gov:443
/cvmfs/dune.opensciencegrid.org/products/dune/rucio/v35_4_0/NULL/lib/python3.9/site-packages/urllib3/connectionpool.py:1061: InsecureRequestWarning: Unverified HTTPS request is being made to host 'dune-rucio.fnal.gov'. Adding certificate verification is strongly advised. See: https://urllib3.readthedocs.io/en/1.26.x/advanced-usage.html#ssl-warnings
warnings.warn(
DEBUG:urllib3.connectionpool:https://dune-rucio.fnal.gov:443 "POST /traces/ HTTP/1.1" 404 207
DEBUG:dogpile.lock:value creation lock <dogpile.cache.region.CacheRegion._LockWrapper object at 0x2ad99967dd00> acquired
DEBUG:dogpile.lock:Calling creation function for previously expired value
DEBUG:dogpile.cache.region:Cache value generated in 0.000 seconds for key(s): "host_to_choose_choice['https://dune-rucio.fnal.gov']"
DEBUG:dogpile.lock:Released creation lock
DEBUG:urllib3.connectionpool:Resetting dropped connection: dune-rucio.fnal.gov
DEBUG:urllib3.connectionpool:https://dune-rucio.fnal.gov:443 "PUT /replicas HTTP/1.1" 200 0
DEBUG:urllib3.connectionpool:https://dune-rucio.fnal.gov:443 "POST /dids/testpro/awt-uploads-202445/dids HTTP/1.1" 201 7
DEBUG:dogpile.lock:value creation lock <dogpile.cache.region.CacheRegion._LockWrapper object at 0x2ad99991c280> acquired
DEBUG:dogpile.lock:Calling creation function for previously expired value
DEBUG:dogpile.cache.region:Cache value generated in 0.000 seconds for key(s): "host_to_choose_choice['https://dune-rucio.fnal.gov']"
DEBUG:dogpile.lock:Released creation lock
DEBUG:urllib3.connectionpool:Starting new HTTPS connection (1): dune-rucio.fnal.gov:443
DEBUG:urllib3.connectionpool:https://dune-rucio.fnal.gov:443 "POST /replicas/list HTTP/1.1" 200 None
DEBUG:urllib3.connectionpool:Starting new HTTPS connection (1): dune-rucio.fnal.gov:443
DEBUG:urllib3.connectionpool:https://dune-rucio.fnal.gov:443 "GET /dids/testpro/awt-uploads-202445/files HTTP/1.1" 401 106
DEBUG:charset_normalizer:Encoding detection: ascii is most likely the one.
DEBUG:charset_normalizer:Encoding detection: ascii is most likely the one.
DEBUG:charset_normalizer:Encoding detection: ascii is most likely the one.
DEBUG:urllib3.connectionpool:Starting new HTTPS connection (1): dune-rucio.fnal.gov:443
DEBUG:urllib3.connectionpool:https://dune-rucio.fnal.gov:443 "GET /auth/x509_proxy HTTP/1.1" 200 0
DEBUG:urllib3.connectionpool:Starting new HTTPS connection (1): dune-rucio.fnal.gov:443
DEBUG:urllib3.connectionpool:https://dune-rucio.fnal.gov:443 "GET /dids/testpro/awt-uploads-202445/files HTTP/1.1" 503 299
[33;1m2024-11-06 19:03:03,999 WARNING Waiting 0.5s due to reason: server returned 503 [0m
WARNING:baseclient:Waiting 0.5s due to reason: server returned 503
DEBUG:urllib3.connectionpool:Starting new HTTPS connection (2): dune-rucio.fnal.gov:443
DEBUG:urllib3.connectionpool:https://dune-rucio.fnal.gov:443 "GET /dids/testpro/awt-uploads-202445/files HTTP/1.1" 200 None
--- Upload try 1/1
--- Rucio upload 1/1 returns 0
--- Replica check try 1/1
--- Dataset awt-uploads-202445 check try 1/1
--- Upload, replicas, and datasets checks passed
'justin-rucio-upload --rse SURFSARA --protocol davs --scope testpro --dataset awt-uploads-202445 awt-1730912441-AmnnciYCoH --timeout 1200' returns 0
subject : /C=UK/O=eScience/OU=Manchester/L=HEP/CN=justin-jobs-production.dune.hep.ac.uk/CN=1949346042/CN=173091243693
issuer : /C=UK/O=eScience/OU=Manchester/L=HEP/CN=justin-jobs-production.dune.hep.ac.uk/CN=1949346042
identity : /C=UK/O=eScience/OU=Manchester/L=HEP/CN=justin-jobs-production.dune.hep.ac.uk/CN=1949346042
type : RFC compliant proxy
strength : 2048 bits
path : /home/awt-proxy.pem
timeleft : 166:56:57
key usage : Digital Signature, Key Encipherment, Key Agreement
=== VO dune extension information ===
VO : dune
subject : /C=UK/O=eScience/OU=Manchester/L=HEP/CN=justin-jobs-production.dune.hep.ac.uk
issuer : /DC=org/DC=incommon/C=US/ST=Illinois/O=Fermi Research Alliance/CN=voms1.fnal.gov
attribute : /dune/Role=Production/Capability=NULL
attribute : /dune/Role=NULL/Capability=NULL
timeleft : 153:07:24
uri : voms1.fnal.gov:15042
===== Results =====
Download/upload commands:
xrdcp --force --nopbar --verbose $read_pfn downloaded.txt
echo '{"namespace":"testpro","name":"FILENAME","size":0}' >tmp.json
metacat file declare --json -f tmp.json "dune:all"
justin-rucio-upload --rse $rse_name --protocol $write_protocol --scope testpro --dataset awt-uploads-202445 --timeout 1200 FILENAME
Use the wrapper job link on the page for the job on the justIN Dashboard to find the full log file, with errors from these commands
Each line: $JUSTIN_SITE_NAME $rse_name $download_retval $upload_retval $read_pfn $write_protocol
==awt== NL_SURFsara DUNE_CERN_EOS 0 99 root://eospublic.cern.ch:1094//eos/experiment/neutplatform/protodune/dune/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== NL_SURFsara DUNE_ES_PIC 0 99 root://xrootd.pic.es:1094/pnfs/pic.es/data/dune/RSE/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== NL_SURFsara DUNE_FR_CCIN2P3_DISK 0 99 root://ccxrootdegee.in2p3.fr:1094/pnfs/in2p3.fr/data/dune/disk/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== NL_SURFsara DUNE_UK_GLASGOW 0 0 root://cephc02.gla.scotgrid.ac.uk:1094//cephfs/dune/RSE/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== NL_SURFsara DUNE_UK_LANCASTER_CEPH 0 99 root://xgate.hec.lancs.ac.uk:1094//cephfs/grid/dune/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== NL_SURFsara DUNE_UK_MANCHESTER_CEPH 0 99 root://meitner.tier2.hep.manchester.ac.uk:1094//cephfs/experiments/dune/RSE/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== NL_SURFsara DUNE_US_BNL_SDCC 0 0 root://dcdndoor.sdcc.bnl.gov:1094//pnfs/sdcc.bnl.gov/data/dune/RSE/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== NL_SURFsara DUNE_US_FNAL_DISK_STAGE 0 98 root://fndca1.fnal.gov:1094/pnfs/fnal.gov/usr/dune/persistent/staging/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== NL_SURFsara NIKHEF 0 99 root://dune.dcache.nikhef.nl:1094/pnfs/nikhef.nl/data/dune/generic/rucio/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== NL_SURFsara PRAGUE 0 99 root://golias100.farm.particle.cz:1094/dpm/farm.particle.cz/home/dune/RSE/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== NL_SURFsara QMUL 51 99 root://xrootd01.escqmul.ac.uk:1094//dune/RSE/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== NL_SURFsara RAL-PP 0 0 root://mover.pp.rl.ac.uk:1094/pnfs/pp.rl.ac.uk/data/dune/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== NL_SURFsara RAL_ECHO 0 99 root://xrootd.echo.stfc.ac.uk:1094/dune:/protodune/RSE/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== NL_SURFsara SURFSARA 0 0 root://penguin12.grid.surfsara.nl:21094/pnfs/grid.sara.nl/data/dune/disk/RSE/testpro/bb/7f/awt-download-2023-03-07-01.txt davs 